江苏沿江地区农业科学研究所,南通226012
研究方向为豆类作物遗传育种,E-mail: 2279790926@qq.com
生物育种钟山实验室(ZSBBL-KY2023-03);江苏省重点研发计划项目(BE2022328);江苏沿江地区农业科学研究所生物育种专项[YJSW(2024)001];江苏省“双创人才”(JSSCRC2022469)
Jiangsu Yanjiang Institute of Agricultural Sciences, Nantong 226012
Zhongshan Biological Breeding Laboratory (ZSBBL-KY2023-03); Jiangsu Key Research and Development Program (BE2022328); Biological Breeding Special Project of Jiangsu Yanjiang Institute of Agricultural Sciences [YJSW (2024) 001]; Innovative and Entrepreneurial Talent Program of Jiangsu Province (JSSCRC2022469)
TIFY家族作为植物特有的转录因子家族,在种子发育、信号传导及逆境胁迫应答等多种植物生理过程中发挥着重要调控作用。以大豆基因组数据为基础,结合种子发育及种子大小相关转录组数据,采用生物信息学方法对大豆GmTIFY家族基因进行全基因组鉴定和系统分析,并借助蛋白互作网络、qRT-PCR与比较基因组学等手段挖掘对大豆种子大小响应的候选基因。结果表明,从大豆种子发育转录组数据中共鉴定获得26个GmTIFY差异基因;结合种子大小转录组数据进一步筛选到16个与种子大小相关候选基因。共线性分析显示,大豆与拟南芥、水稻、番茄分别存在12、4、11对共线性基因,且发现片段复制是GmTIFY基因家族扩张的主要驱动力,该基因家族的进化过程受纯化选择作用。KEGG富集分析发现,GmTIFY基因只富集于植物激素信号转导通路。通过同源比对,在大豆中进一步筛选出11个与种子大小相关的核心候选基因,其互作蛋白均参与种子大小的调控过程。qRT-PCR验证结果显示,在种子发育20 d时有8个基因在小粒大豆品种中的表达量显著高于大粒品种,1个基因在小粒品种中的表达量显著低于大粒品种,进一步证实这9个基因可能参与种子大小的调控过程。本研究结果为解析大豆种子大小调控的分子机制,挖掘大豆高产育种候选基因提供了理论参考与基因资源。
As a plant-specific transcription factor family, the TIFY family plays an important regulatory role in various plant physiological processes such as seed development, signal transduction and stress response. In this study, based on the soybean genome data, including combined with the transcriptome data related to seed development and seed size, we performed genome-wide identification and systematic analysis of the soybean GmTIFY gene family using bioinformatics approaches. Furthermore,candidate genes responsive to soybean seed size were mined through protein-protein interaction network analysis, qRT-PCR and comparative genomics. The results showed that a total of 26 differentially expressed GmTIFY genes were identified from the transcriptome data of soybean seed development. Combined with seed size-related transcriptome data, 16 candidate genes associated with seed size were further identified. Collinearity analysis revealed 12, 4 and 11 pairs of collinearity genes between Glycine max and Arabidopsis thaliana, Oryza sativa and Solanum lycopersicum, respectively. It was found that segmental duplication was the main driving force for the expansion of the GmTIFY gene family, and the evolutionary process of this family was subject to purifying selection. KEGG enrichment analysis indicated that GmTIFY genes were exclusively enriched in plant hormone signal transduction pathways. Through homologous comparison, 11 core candidate genes related to seed size were further identified in soybean, and their interacting proteins were all involved in the regulation of seed size. qRT-PCR validation showed that at 20 days of seed development, the expression levels of eight genes were significantly higher in small-seeded soybean varieties than in large-seeded varieties, while the expression of one gene was significantly lower in small-seeded varieties, further confirming that these nine genes may participate in the regulation of seed size. The results of this study provide a theoretical references and genetic resources for dissecting the molecular mechanism of soybean seed size regulation and discovering candidate genes for high-yield breeding of soybean.
石宇欣,周恩强,王永强,等.大豆
