1山西农业大学农学院/山西省特用作物遗传和代谢工程研究中心,太谷 030801;2山西农业大学高粱研究所,晋中 030600;3山西农业大学 玉米研究所,忻州 034000;4山西农业大学生命科学学院/山西省特用作物遗传和代谢工程研究中心,太谷 030801
研究方向为植物重要功能基因的挖掘与应用,E-mail: 2016725880@qq.com
山西省研究生实践创新项目(2024SJ125);中央引导地方科技发展资金项目(YDZJSX2024B007);山西省科技合作与交流专项(202304041101009);山西省现代农业产业技术体系建设专项(2025CYJSTX06-04/22);忻州市重点研发计划(20250212);山西农业大学杂粮研究院计划(ZLYB2501);山西农业大学科技创新提升工程(CXGC2025023)
1College of Agronomy, Shanxi Agricultural University/Shanxi Engineering Research Center for Genetics and Metabolism of Special Crops, Taigu 030801;2Sorghum Research Institute, Shanxi Agricultural University, Jinzhong 030600;3Maize Research Institute, Shanxi Agricultural University, Xinzhou 034000;4College of Life Sciences, Shanxi Agricultural University/ Shanxi Engineering Research Center for Genetics and Metabolism of Special Crops, Taigu 030801
Shanxi Provincial Graduate Practice and Innovation Project (2024SJ125); Central Guiding Local Science and Technology Development Fund Project (YDZJSX2024B007); Shanxi Provincial Science and Technology Cooperation and Exchange Special Project (202304041101009); Shanxi Provincial Modern Agricultural Industry Technology System Construction Special Project (2025CYJSTX06-04/22); Xinzhou City Key R&D Plan (20250212); Grain Research Institute of Shanxi Agricultural University Project (ZLYB2501); Science and Technology Innovation Enhancement Project of Shanxi Agricultural University(CXGC2025023)
基于六倍体甘薯品种Beauregard参考基因组,共鉴定获得67个IbCOMT家族成员,对其理化性质、亚细胞定位、基因结构、保守基序、系统发育、共线性、启动子顺式作用元件等进行系统分析,结果显示,IbCOMT蛋白氨基酸数目介于192~721 aa,分子量介于21.01 kDa~80.47 kDa,理论等电点介于5.13~9.44;多数成员亲水性平均系数为负值,表明其整体为亲水性蛋白。系统进化分析将IbCOMT家族划分为两个亚族,同一亚族内成员的外显子-内含子结构与保守基序组成相对保守。转录组表达分析结果表明,IbCOMT58在甘薯地上组织中表达水平较高,且在盐、ABA及干旱胁迫条件下其表达量明显上调。以IbCOMT1启动子片段为诱饵进行酵母单杂交筛选,获得了ERF4、NF-YA10、MADS-box、bHLH81及eIF5A等候选结合因子,点对点验证结果表明以上候选结合因子与诱饵片段具有较强结合活性。通过双荧光素酶活体检测分析,进一步证实MADS-box、ERF4和NF-YA10能够直接结合IbCOMT1启动子,并发挥转录激活功能。研究结果为深入探究甘薯IbCOMT家族的功能及IbCOMT1的转录调控机制提供了候选基因与试验依据。
Based on the reference genome of the hexaploid sweet potato variety Beauregard, a total of 67 IbCOMT family members were identified. Their physicochemical properties, subcellular localization, gene structure, conserved motifs, phylogeny, collinearity, and promoter cis-acting elements were systematically analyzed. The results showed that the number of amino acids of IbCOMT protein ranged from 192 to 721 aa, the molecular weight ranged from 21.01 kDa to 80.47 kDa, and the theoretical isoelectric point ranged from 5.13 to 9.44.The average coefficient of hydrophilicity of most members was negative, indicating that they were hydrophilic proteins as a whole. Phylogenetic analysis divided the IbCOMT family genes into two subfamilies, with members within the same subfamily showing generally conserved exon-intron organization and motif composition. The results of transcriptome expression analysis showed that IbCOMT58 was highly expressed in the aboveground tissues of sweetpotato, and its expression was significantly up-regulated under salt, ABA and drought stress conditions. The IbCOMT1 promoter fragment was used as a bait for yeast one-hybrid screening, and candidate binding factors such as ERF4, NF-YA10, MADS-box, bHLH81 and eIF5A were obtained. The results of point-to-point verification showed that the above candidate binding factors had strong binding activity with the bait fragment. Through the dual luciferase assay in vivo, it was further confirmed that MADS-box, ERF4 and NF-YA10 can directly bind to the IbCOMT1 promoter and play a transcriptional activation function. This study provides candidate genes and experimental basis for further exploring the function of IbCOMT family and the transcriptional regulation mechanism of IbCOMT1 in sweetpotato.
陈锦钗,周广立,黄旭升,等.甘薯
