1.北京农学院植物科学技术学院/农业应用新技术北京市重点实验室,北京102206;2.北京农学院生物与资源环境学院,北京102206
研究方向为小豆遗传育种,E-mail : 1849526009@qq.com
赵波,研究方向为小豆遗传育种,E-mail : zhaobobac@sohu.com
余建平,研究方向为小豆分子进化及育种,E-mail : jpyu@bua.edu.cn
万平,研究方向为小豆遗传育种,E-mail : pingwan@bua.edu.cn
2023年北京农学院省部级科研平台开放课题(BUAPSP202308)
1.College of Plant Science and Technology, Beijing Agricultural University/ Beijing Key Laboratory of New Technique in Agricultural Application, Beijing 102206;2.College of Bioscience and Resources Environment, Beijing Agricultural University, Beijing 102206
Project of Science Platform of BUA(Beijing University of Agriculture) in 2023 (BUAPSP202308)
挖掘小豆开花时间相关遗传位点对于指导小豆育种与生产至关重要。以220份栽培小豆组成的自然群体为试验材料,在安徽省马鞍山市开展连续两年的开花时间表型观测,同时结合全基因组重测序获得的SNPs分析该小豆群体的群体结构,并使用混合线性模型进行开花时间全基因组关联分析。结果表明,群体结构分析将小豆材料分成3个亚群(G1,G2,G3),这些亚群的划分与材料的地理位置和品种类型相关。小豆材料开花时间表型变异丰富,介于40~81 d之间,不同亚群的开花时间差异显著。关联分析共定位到8个开花时间QTL,分布在2、3、4、5、10和11号染色体上。基于基因功能注释,从这些QTL区间初步筛选出9个可能影响开花时间的候选基因。对在模式植物中直接调控开花时间的4个候选基因Vigan02g270300(前体mRNA剪切复合体II Clp1家族蛋白)、Vigan10g218300(CDF转录因子)、Vigan11g079500(CONSTANS类锌指蛋白)和Vigan11g080900(春化不敏感蛋白VIL1)进行单倍型分析,发现Vigan10g218300的一个单倍型Hap2与早花有关。本研究为进一步解析小豆开花调控的遗传机制、培育生育期适宜的小豆品种提供理论依据。
Identifying genetic loci associated with flowering time in adzuki bean (Vigna angularis L.) is critical for breeding and agricultural production. This study investigated flowering time variations across 220 cultivated adzuki bean accessions through biennial field trials conducted in Ma'anshan city, Anhui province, China. Population structure analysis was performed using SNPs obtained from whole-genome resequencing, followed by genome-wide association analysis (GWAS) of flowering time employing a mixed linear model. The population structure analysis revealed three distinct subpopulations (G1, G2, G3), which correlated with geographical origins and variety type. Substantial phenotypic variation in flowering time was observed across adzuki bean accessions, ranging from 40 to 81 days, with significant differences observed among subpopulations. GWAS identified eight quantitative trait loci (QTLs) for flowering time distributed across chromosomes 2, 3, 4, 5, 10, and 11. Functional annotation of genes within these QTL intervals prioritized nine candidate genes potentially regulating flowering time. Haplotype analysis was performed on four candidate genes, Vigan02g270300 (Clp1 family protein in precursor mRNA splicing complex II), Vigan10g218300 (CDF transcription factor), Vigan11g079500 (CONSTANS-like zinc finger protein), and Vigan11g080900 (vernalization insensitive protein VIL1), whose homologous genes in model plants directly regulate flowering time. Among these, the haplotype Hap2 of Vigan10g218300 was associated with early flowering. These findings provide a theoretical basis for further analyzing the genetic mechanism of flowering regulation in adzuki bean and breeding cultivars with optimized growth periods.
李新根,吴小草,温雨鑫,等.小豆开花时间全基因组关联分析[J].植物遗传资源学报,2025,26(7):1448-1458.
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