基于转录组学的蓖麻耐盐基因的挖掘
作者:
作者单位:

1.内蒙古民族大学农学院,通辽 028000;2.内蒙古民族大学生命科学与食品学院,通辽 028000

作者简介:

研究方向为作物遗传育种, E-mail: 2338245452@qq.com

通讯作者:

向殿军,研究方向为作物遗传育种, E-mail: xiangdianjun00@126.com

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基金项目:

国家自然科学基金项目(31860389, 32060492); 内蒙古自治区自然科学基金项目(2020LH03006, 2022MS03057, 2023MS03032);内蒙古自治区直属高校基本科研业务费项目(GXKY23Z047)


Transcriptomics-Assisted Mining of Salt-Tolerant Genes in Ricinus communis
Author:
Affiliation:

1.College of Agriculture Life Science, Inner Mongolia Minzu University, Tongliao 028000;2.College of Life Science and Food Engineering, Inner Mongolia Minzu University, Tongliao 028000

Fund Project:

Foundation projects: National Natural Science Foundation Projects (31860389, 32060492); Natural Science Foundation of Inner Mongolia (2020LH03006, 2022MS03057, 2023MS03032);The Basic Scientifie Research Business Fee Project of Colleges and Universities Directly under the Inner Mongolia Autonomous Region(GXKY23Z04)

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    摘要:

    为获取蓖麻耐盐基因的序列信息,挖掘盐胁迫下差异表达基因及相关代谢途径,本研究以盐胁迫(300 mmol/L NaCl)处理0、12和24 h后通篦5号的幼苗真叶为试验材料,借助高通量测序技术进行转录组测序分析。结果表明,在盐胁迫12 h和24 h分别有4822和3103个差异表达基因。对共有的1872个差异表达基因进行共表达模式聚类分析,发现这些基因共有3种表达模式。KEGG代谢通路分析结果显示,缬氨酸、亮氨酸和异亮氨酸降解(ko00280)、植物昼夜节律调控(ko04712)以及淀粉和蔗糖代谢(ko00500)3个通路在盐胁迫适应过程中显著富集;GO功能富集分析结果显示,多数差异表达基因被富集到生物过程中,其中细胞进程(GO:0009987)和响应非生物胁迫(GO:0009628)过程富集到差异表达基因的数目最多。另外,共有19个转录因子参与蓖麻的盐胁迫响应。植物激素信号转导通路中有42个差异表达基因,其中有97.6%的基因分别在12 h和24 h是上调表达的。此外,还筛选出包括光合作用途径、抗氧化调节、Na+、K+和Ca2+转运相关参与蓖麻幼苗盐胁迫的差异表达基因。qRT-PCR结果证明了上述试验结果可靠。综上,该研究可为蓖麻耐盐基因挖掘及盐胁迫适应机制的解析提供理论依据。

    Abstract:

    To obtain the sequence information of salt-tolerant genes in castor bean, we conducted a study to explore differentially expressed genes and related metabolic pathways under salt stress. We used seedling leaves of castor bean (cultivar Tongbi No. 5) treated with salt stress (300 mmol/L NaCl) for 0, 12, and 24 hours as experimental materials. Transcriptome sequencing analysis was performed using high-throughput sequencing technology. The results showed that there were 4822 and 3103 differentially expressed genes at 12 and 24 hours of salt stress, respectively. Co-expression pattern clustering analysis was conducted on the shared 1872 differentially expressed genes, and three expression patterns were identified. KEGG pathway analysis revealed significant enrichment of three pathways, namely valine, leucine, and isoleucine degradation (ko00280), plant circadian rhythm regulation (ko04712), and starch and sucrose metabolism (ko00500), in the adaptation process to salt stress. GO functional enrichment analysis showed that most differentially expressed genes were enriched in biological processes, with the highest enrichment in cellular processes (GO:0009987) and response to non-biological stress (GO:0009628). In addition, a total of 19 transcription factors were found to be involved in the salt stress response of castor bean. In the plant hormone signal transduction pathway, 42 differentially expressed genes were identified, with 97.6% of genes showing upregulated expression at 12 and 24 hours. Furthermore, we identified differentially expressed genes involved in photosynthesis, antioxidant regulation, and Na+, K+, and Ca2+ transport related to salt stress in castor bean seedlings. qRT-PCR results confirmed the reliability of the above experimental results. In conclusion, this study provides a theoretical basis for the exploration of salt-tolerant genes and the analysis of salt stress adaptation mechanisms in castor bean.

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李艳肖,张春兰,徐兴源,等.基于转录组学的蓖麻耐盐基因的挖掘[J].植物遗传资源学报,2023,24(6):1778-1793.

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  • 收稿日期:2023-05-06
  • 最后修改日期:2023-06-04
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  • 在线发布日期: 2023-10-31
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