玉米K718d矮秆基因的定位及候选基因分析
作者:
作者单位:

1.四川农业大学农学院,成都 611130;2.四川正红生物技术有限责任公司,成都 610213

作者简介:

研究方向为玉米遗传育种,E-mail:1305324798@qq.com

通讯作者:

柯永培,研究方向为玉米遗传育种,E-mail:keyp169@163.com

中图分类号:

基金项目:

四川省重大科技专项(2022ZDZX0013); 四川省重点研发项目(2021YFZ0017)


Localization and Candidate Gene Analysis of a Maize Dwarf Mutant K718d
Author:
Affiliation:

1.College of Agronomy, Sichuan Agricultural University, Chengdu 611130;2.Sichuan Zhenghong Bio Co., Ltd., Chengdu 610213

Fund Project:

Foundation projects: Major Science and Technology Project of Sichuan Province (2022ZDZX0013); Key R&D Project of Sichuan Province(2021YFYZ0017)

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    摘要:

    为发掘玉米矮秆基因,解析矮化机理,以玉米矮秆突变体K718d、野生型K718及其F2分离群体为材料,结合BSA全基因组重测序(BSA-reseq)和转录组测序(RNA-seq)定位矮秆基因。在1号染色体上检测到3个侯选区域,总长度为21.03 Mb,包含基因438个。共鉴定出差异表达基因2374个,其中上调基因1452个,下调基因922个。KEGG分析显示,差异表达基因主要涉及苯丙烷代谢、脂肪酸链延长和半乳糖代谢等通路。基因功能注释显示,差异表达基因参与细胞生长发育、细胞壁组成和植物激素合成代谢等过程。BSA-reseq与RNA-seq联合分析,共筛选出基因26个,其中非同义突变基因19个。结合同源基因功能注释、基因表达量和生物信息学分析,初步获得与植物激素代谢相关的Zm00001d032035Zm00001d032422候选基因2个。PCR扩增和qRT-PCR 分析显示,与K718相比,K718d中2个基因编码区碱基和氨基酸序列均有不同程度突变,基因表达量均极显著降低。研究结果为进一步克隆矮秆基因和育种应用提供参考。

    Abstract:

    In order to explore the dwarf gene and analyze the dwarfing mechanism in maize, the maize dwarf mutant K718d, wild-type K718 and their F2 segregation population were used for gene mapping by BSA whole genome resequencing (BSA-reseq) and transcriptome sequencing (RNA-seq). Three candidate regions with a total length of 21.03 Mb hosting 438 annotated genes were detected on chromosome 1. A total of 2374 differentially expressed genes (DEGs) were identified, including 1452 up-regulated genes and 922 down-regulated genes. KEGG analysis showed that DEGs were mainly involved in metabolic pathways including phenylpropane metabolism, fatty acid chain elongation and galactose metabolism. Gene function annotations showed that DEGs were involved in cell growth, cell wall composition, and plant hormone anabolism. BSA-reseq and RNA-seq suggested 26 candidate genes, of which 19 were found with non-synonymous mutations. Two candidate genes Zm00001d032035 and Zm00001d032422, which are annotated with plant hormone metabolism, were obtained based on the homologous gene function annotation, gene expression level and bioinformatics analysis. PCR amplification and qRT-PCR analysis showed that, both genes contained the amino acid substitutions in the coding region in K718d if compared to K718, and both showed decreased transcripts. These results provide reference for further dwarfing gene cloning and application in maize breeding.

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王琴娣,石海春,余学杰,等.玉米K718d矮秆基因的定位及候选基因分析[J].植物遗传资源学报,2023,24(2):559-568.

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  • 收稿日期:2022-09-25
  • 最后修改日期:2022-10-19
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  • 在线发布日期: 2023-03-14
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