Genome-wide Identification and Analysis of SPL Gene Family in Radish
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Institute of Vegetables and Flowers,Chinese Academy of Agricultural Sciences/Laboratory of Biology and Genetics Improvement of Horticultural Crops, Ministry of Agriculture and Rural Affairs

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National Key Research and Development Program of China(2016YFD0100204-02), NSFC(31772303);Special Fund For Basic Scientific Research Of Central Public Welfare Scientific Research Institutes(IVF-BRF2019001,IVF-BRF2020001), the Science and Technology Innovation Program of the Chinese Academy of Agricultural Sciences (CAAS-ASTIP-IVFCAAS)

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    Abstract:

    SQUAMOSA promoter binding protein-like(SPL)gene family, as a class of transcription factors present widely in plants, has been shown to play important biological roles in plant growth, development, signal transduction, physiological and biochemical processes. In this study, 26 SPL genes from the radish genome have been identified using bioinformatic approach, and they are designated RsSPL1-RsSPL26 according to their locations on eight chromosomes. The amino acids encoded by SPL genes are variable from 139 to 1021 aa, with the protein molecular weight ranged from 16,167.7 to 112,219.48 Da and an isoelectric point of 5.77 to 9.67. Radish SPL genes contain 2 to 11 exons. MicroRNA target prediction suggested that 12 RsSPL genes contained complementary sequence of miR156 and 11 RsSPL genes contained complementary sequence of miR157. The expression patterns of RsSPL genes in different tissues and development stages showed spatial and temporal differences, and the same subfamily members showed similar expression patterns. Thus, these results provided insights for the functional characterization of the SPL genes family in radish.

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History
  • Received:December 04,2020
  • Revised:January 21,2021
  • Adopted:February 09,2021
  • Online: July 08,2021
  • Published:
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