沈阳农业大学水稻研究所/农业农村部东北水稻生物学与遗传育种重点实验室,沈阳110866
研究方向为水稻分子生理机制研究,E-mail: 18302427383@163.com
王嘉宇,研究方向为水稻分子遗传育种与种质创新,E-mail: wangjiayu@syau.edu.cn
生物育种国家科技重大专项(2023ZD04022);沈阳市自然科学基金(23-503-6-20)
Rice Research Institute, Shenyang Agricultural University/Key Laboratory of Northeast Rice Biology and Genetic Breeding, Ministry of Agriculture and Rural Affairs , Shenyang 110866
Foundation projects: Biological Breeding-National Science and Technology Major Project (2023ZD04022); Natural Science Foundation of Shenyang (23-503-6-20)
动力相关蛋白(DRP)是一类大分子GTP水解酶蛋白,参与胞质分裂、细胞器分裂、膜系统运输和网格蛋白介导的后高尔基体转运等细胞活动。本研究在水稻(Oryza sativa L.)基因组中共鉴定出14个OsDRP基因,分为OsDRP1~OsDRP5亚家族。理化性质与亚细胞定位预测显示,OsDRP为大分子不稳定蛋白,亚细胞定位在线粒体、细胞质或叶绿体上。同一亚家族的保守基序、保守结构域及外显子的数量和分布相似,均含有Motif 1、Motif 2和Motif 7基序。OsDRP家族在进化中存在3组大片段复制事件,Ka/Ks均小于1,为净化选择。OsDRP与网格蛋白接头复合体和四肽重复蛋白存在互作关系,OsDRP2A和OsDRP2B结合能为-17.4 kcal/mol。OsDRP基因启动子上包含脱落酸、生长素、低温、干旱、光响应和植物生长发育相关顺式作用元件。qRT-PCR试验表明,有9个基因响应低温胁迫,8个基因响应干旱胁迫,其中OsDRP1E和OsDRP3A基因在4℃和20% PEG处理下表达量均上调,可能是响应非生物胁迫的重要基因。OsDRP5A和OsDRP5B外显子区分别有12个和15个核苷酸多样性位点,在水稻中具有遗传多样性。以上结果为深入研究水稻DRP家族在水稻生长发育中的基因功能提供了理论参考。
Dynamin-related proteins (DRPs) are large GTPases involved in cytokinesis, organelle biogenesis, membrane system transport, and post trans-Golgi network trafficking proteins. In this study, a total of 14 DRP genes were identified in the rice (Oryza sativa L.) genome, classified into five subfamilies, namely OsDRP1~OsDRP5. Based on the prediction of physicochemical properties and subcellular localization, OsDRPs were identified as large-molecular-weight unstable proteins, which were localized in the mitochondria, cytoplasm, or chloroplasts. The members within the same subfamily were similar in the number and distribution of conserved motifs, conserved domains, and exons. Motif 1,Motif 2 and Motif 7 were present in all OsDRPs. Three large-segment duplication events were identified in the OsDRP gene family, and the Ka/Ks<1 suggested that these genes were subjected to purifying selection during evolution. The cis-acting elements of OsDRP gene promoters involved in hormone regulation, stress response and plant growth. OsDRPs were predicted to interact with the clathrin adaptor complex and tetratricopeptide repeat proteins, and the binding energy of OsDRP2A and OsDRP2B is -17.4 kcal/mol. The qRT-PCR analysis revealed that 9 genes were significantly induced by low-temperature stress and 8 genes by drought stress. The expression levels of OsDRP1E and OsDRP3A genes significantly increased under 4℃ and 20% PEG treatment, and they might be important genes in response to abiotic stress. There are 12 and 15 nucleotide diversity sites in the exon regions of OsDRP5A and OsDRP5B, respectively, indicating that these two genes exhibit genetic diversity in rice.These findings provide a theoretical basis for further investigating the gene functions of the DRP family in rice growth and development.
程艳双,袁博,王嘉宇.水稻
