降香黄檀的DNA条形码鉴定研究
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海口市重点科技项目基金,编号2011-0036


DNA barcoding the plants of Dalbergia odorifera
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Haikou city Science Foundation (Grant No. 2011__0036)

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    摘要:

    DNA条形码技术是利用基因组中一段短的标准序列进行物种的鉴定并探索其亲缘进化关系。本研究对采自海南不同地区降香黄檀五个居群24份样品的psbA-trnH,rbcL,核ITS及ITS2序列进行PCR扩增和测序,比较各序列扩增和测序效率。种间和种内变异,采用BLAST1和邻接 (NJ) 法构建系统聚类树方法评价不同序列的鉴定能力。结果表明ITS2在所研究的材料中具有最高的扩增和测序效率,而ITS扩增效率较低。ITS2完整序列在区分黄檀属不同种间差异具有较大优势。因此可利用ITS2从分子水平区分降香黄檀与其他混伪种。

    Abstract:

    DNA barcoding is a technique that helps in identification of species by using DNA sequences from a small fragment of the genome. In the present study, we used this technique to identify Dalbergia odorifera from its adulterants Five populations from different regions of Hainan province were selected and psbA-trnH, rbcL nuclear ITS and ITS2 sequences were amplified from twenty-four samples using PCR. Sequence amplification and sequencing efficiency of the samples was compared.We used BLAST1 and building system clustering tree method by NJ to determine interspecific and intraspecific variations. Our results showed that ITS2 had the highest amplification and sequencing efficiency among all the studied materials, while ITS had lower amplification efficiency. The complete sequence of ITS2 demonstrated greater advantages in distinguishing different strains of Dalbergia odorifera. Our study demonstrated the efficacy of ITS2 to distinguish between Dalbergia odorifera and other adulterants species at the molecular level.

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唐历波,李栎,林维键,等.降香黄檀的DNA条形码鉴定研究[J].植物遗传资源学报,2013,14(6):1147-1152.

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  • 收稿日期:2013-02-01
  • 最后修改日期:2013-06-01
  • 录用日期:2013-09-24
  • 在线发布日期: 2013-09-24
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